Run experiment

If you want to store your run directory files elsewhere than here, set a simulation ID (replace MY-SIMULATION) and make ${wfe_dir}/run into a symlink pointing to your new directory.

cd ${wfe_dir}
export sim_id=MY-SIMULATION
export scratch_dir=$SCRATCH/$USER/$sim_id
mkdir -p $scratch_dir/run
git rm run/.gitkeep
ln -snf $scratch_dir/run run

The configuration of the simulation is managed by two shell-based configure files besides the git submodules. master.conf for generic setting such as simulation time or model-id and expid.conf for doing component specific settings.

Adapt resources and time in the setup-script.

cd ${wfe_dir}/ctl
vi master.conf

Start simulation

./control_tsmp2.sh